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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19444979_19445538_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19444979 - 19445538
Intron Length:
560

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTGTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTATTGTAACA
Flanking Amino Acid:
PAAAAAESQETLGQMDNEAA
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
71.8
33.2
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
77.4
0.62
1
73.4
40.7
Minor 5ss
24.1
-3
3.2
29.7
43.3
Minor BPS
57.8
0.24
2
75.15
36.6

Associated Gene:

Gene:
SNAPC5
Ensembl Gene ID:
ENSAPLG00000001863
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001857
19444871 - 19446011
1141