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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19447000_19447086_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19447000 - 19447086
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TATTTGCTAATG
Flanking Amino Acid:
RNTILRHAQNHKLKQEKKAK
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
78.8
29.6
Major BPS
76.8
0.67
1
66
40.9
Major PPT
91.5
0.93
0.6
87.3
23
Minor 5ss
33
-1.9
2.7
39.4
38.9
Minor BPS
47.2
-0.3
2.3
60.62
41.6

Associated Gene:

Gene:
RPL4
Ensembl Gene ID:
ENSAPLG00000015853
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016555
19446772 - 19451881
5110