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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19447208_19447442_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19447208 - 19447442
Intron Length:
235

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAATCACT
5'SS Class:
major
3'SS Sequence:
CTGTCCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAA
U12 Branch Point Sequence:
TGGTCATGACGC
Flanking Amino Acid:
QEIQKALRPPKKKIHRRVLK
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.1
71
39
Major BPS
65.6
0.39
0.9
55.4
32.7
Major PPT
80.6
0.69
0.8
77.3
31.4
Minor 5ss
43.8
-0.7
2.8
59.6
38.7
Minor BPS
42.1
-0.6
2.1
53.12
44

Associated Gene:

Gene:
RPL4
Ensembl Gene ID:
ENSAPLG00000015853
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016555
19446772 - 19451881
5110