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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19447527_19447720_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19447527 - 19447720
Intron Length:
194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
GTTTGCTTCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTAAA
U12 Branch Point Sequence:
TTTTTCGTACCA
Flanking Amino Acid:
RKPATLKSDYNLPMHKMTNT
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.5
27.8
Major BPS
63.9
0.35
1
63.9
30.3
Major PPT
78.8
0.65
0.9
72.3
37.9
Minor 5ss
37.7
-1.4
2.7
44.2
37
Minor BPS
57
0.22
2.3
78.35
38.8

Associated Gene:

Gene:
RPL4
Ensembl Gene ID:
ENSAPLG00000015853
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016555
19446772 - 19451881
5110