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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19447878_19448293_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19447878 - 19448293
Intron Length:
416

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTTA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCATTACAAAT
Flanking Amino Acid:
GIIKAFRNIPGITLLDVNKL
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
86
25
Major BPS
100
1.24
0.5
100
0
Major PPT
85.1
0.79
0.7
80.9
31.3
Minor 5ss
43.8
-0.7
2.8
58.6
45.8
Minor BPS
44.1
-0.3
1.8
62.7
41.3

Associated Gene:

Gene:
RPL4
Ensembl Gene ID:
ENSAPLG00000015853
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016555
19446772 - 19451881
5110