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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19448905_19449396_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19448905 - 19449396
Intron Length:
492

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAACT
5'SS Class:
strong_major
3'SS Sequence:
CAATCCTCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CGTTTCTGAATA
Flanking Amino Acid:
SALPALVMSKGHCIEEIPEL
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.8
83.3
27.9
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
61.8
0.27
0.9
60.2
36.1
Minor 5ss
30.7
-2.2
2.9
41.1
44.9
Minor BPS
62.9
0.4
1.4
68.42
38.2

Associated Gene:

Gene:
RPL4
Ensembl Gene ID:
ENSAPLG00000015853
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016555
19446772 - 19451881
5110