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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19449536_19449971_R

Intron Information:

Intron Rank:
3
Intron Class:
minor
Intron Phase:
0
Intron Coordinates:
19449536 - 19449971
Intron Length:
436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
TGTAGATACATAG|A
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TTGTTCTTAACT
Flanking Amino Acid:
HRSGQGAFGNMCRGGRMFAP
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.9
0.09
1.4
62.3
44.7
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
58
0.18
1
51.1
42.1
Minor 5ss
94.6
1.5
0.8
89.3
22.6
Minor BPS
87.4
1.25
0.9
95.44
31.2

Associated Gene:

Gene:
RPL4
Ensembl Gene ID:
ENSAPLG00000015853
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016555
19446772 - 19451881
5110