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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19453590_19453682_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19453590 - 19453682
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTGTA
5'SS Class:
major
3'SS Sequence:
CTTGTATTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTCCCATCAAAT
Flanking Amino Acid:
NSMVYILQKATLLKDHNEGG
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
75.6
34.3
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
79.9
0.67
0.8
77.8
35.6
Minor 5ss
38.5
-1.3
3.3
54.7
43.6
Minor BPS
49.7
0.06
1.9
72.8
43.2

Associated Gene:

Gene:
ZWILCH
Ensembl Gene ID:
ENSAPLG00000000968
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001168
19452232 - 19462783
10552