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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19455708_19455946_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19455708 - 19455946
Intron Length:
239

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACGTCAA
5'SS Class:
major
3'SS Sequence:
CTGGAACTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
GTTTCTGGAACT
Flanking Amino Acid:
PPPLTAAATLNISLESGDPR
Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
67
40
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
68.3
0.41
1
62.7
43.1
Minor 5ss
32.6
-2
3.1
37.6
42.2
Minor BPS
57.2
0.3
2.1
81.55
40

Associated Gene:

Gene:
ZWILCH
Ensembl Gene ID:
ENSAPLG00000000968
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001168
19452232 - 19462783
10552