About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19456444_19457299_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19456444 - 19457299
Intron Length:
856

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATTTCT
5'SS Class:
major
3'SS Sequence:
TCTCCTCTACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCTCCTCTACT
Flanking Amino Acid:
AFELVQGFLTDLKKLDVYCT
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
76
33.7
Major BPS
100
1.24
0.5
100
0
Major PPT
72.7
0.51
0.8
66.8
34.1
Minor 5ss
43
-0.8
2.8
56.8
42.6
Minor BPS
65.2
0.56
1.9
84.71
41.7

Associated Gene:

Gene:
ZWILCH
Ensembl Gene ID:
ENSAPLG00000000968
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001168
19452232 - 19462783
10552