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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19462023_19462691_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19462023 - 19462691
Intron Length:
669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
TTCATCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTATCTTTCATC
Flanking Amino Acid:
PVEHMISNNIGLLCDSTVNG
Intron Amino Acid Position:
602

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
82.1
31
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
82.7
0.74
0.8
77.2
31.4
Minor 5ss
32.6
-2
3.1
42.1
45
Minor BPS
64.6
0.44
1.7
74.68
36.5

Associated Gene:

Gene:
ZWILCH
Ensembl Gene ID:
ENSAPLG00000000968
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001168
19452232 - 19462783
10552