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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19481789_19523342_F

Intron Information:

Intron Rank:
143849
Intron Class:
major
Intron Phase:
Intron Coordinates:
19481789 - 19523342
Intron Length:
41554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTCAT
5'SS Class:
major
3'SS Sequence:
CTTTTTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAA
U12 Branch Point Sequence:
ATTTCTCTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
72
39.5
Major BPS
69
0.47
1
69.9
32.6
Major PPT
92.5
0.96
0.6
87.6
22.8
Minor 5ss
38.1
-1.3
3.1
55.9
42.3
Minor BPS
74.6
0.85
1.6
91.26
31.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027521
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022340
19481489 - 19636949
155461