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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19524784_19636221_F

Intron Information:

Intron Rank:
143851
Intron Class:
major
Intron Phase:
Intron Coordinates:
19524784 - 19636221
Intron Length:
111438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTGACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCTCTTTGACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
73.6
30.3
Major BPS
100
1.24
0.5
100
0
Major PPT
74.5
0.55
1
69.6
40.4
Minor 5ss
27.7
-2.6
3
31.2
36.9
Minor BPS
78.4
0.88
1.1
81.39
33.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027521
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022340
19481489 - 19636949
155461