Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19646518_19673002_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19646518 - 19673002

Intron Length:

26485

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTGGCAGG

5'SS Class:

major

3'SS Sequence:

CTTTCCCCCGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CAATCAC

U12 Branch Point Sequence:

CAAACCCTGACT

Flanking Amino Acid:

SPNVTPGEFSDASTSPDAVK

Intron Amino Acid Position:

307

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.8

0.37

1.3

55.7

48.6

Major BPS

58.2

0.2

1.1

61.4

34.4

Major PPT

79.2

0.66

0.7

73.6

24.6

Minor 5ss

33.7

-1.9

40.4

45.4

Minor BPS

51.3

0.12

1.8

66.78

43.4

Associated Gene:

Gene:

SMAD6

Ensembl Gene ID:

ENSAPLG00000000997

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000000979

19641950 - 19673928

31979