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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1965351_1966674_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1965351 - 1966674
Intron Length:
1324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
ATGTACTTATGT
Flanking Amino Acid:
ETVLDDLDPENALLPAGFRQ
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
87
30
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
86.1
0.81
0.8
80.6
37
Minor 5ss
36
-1.6
3.1
50.1
46.4
Minor BPS
49.6
0.05
2.1
71.2
45.5

Associated Gene:

Gene:
TMOD3
Ensembl Gene ID:
ENSAPLG00000009038
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009480
1965164 - 1983994
18831