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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1975444_1976051_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1975444 - 1976051
Intron Length:
608

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TGTTATTTAAAA
Flanking Amino Acid:
ATDTELCDLAAILGMSNLIT
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1.1
77.3
37.8
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
87.9
0.85
0.7
82.7
25.9
Minor 5ss
30.8
-2.2
3.1
41.8
44.7
Minor BPS
64.9
0.46
1.6
74.66
36.2

Associated Gene:

Gene:
TMOD3
Ensembl Gene ID:
ENSAPLG00000009038
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009480
1965164 - 1983994
18831