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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1976142_1976694_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1976142 - 1976694
Intron Length:
553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
GTTTGATTACAT
Flanking Amino Acid:
SNGVDKDSFSNIVKGEKMLP
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
73.9
0.59
1
81
30.2
Major PPT
96.4
1.04
0.5
95.9
14.1
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
46.2
-0.2
2.3
71.29
45

Associated Gene:

Gene:
TMOD3
Ensembl Gene ID:
ENSAPLG00000009038
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009480
1965164 - 1983994
18831