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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1978128_1980380_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1978128 - 1980380
Intron Length:
2253

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
TTTTCATTCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTTTTTTTCATT
Flanking Amino Acid:
ATRSNDPVAVALADMLRVNT
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
79.2
33.9
Major BPS
100
1.24
0.5
100
0
Major PPT
74
0.54
1
75.2
32.5
Minor 5ss
40.9
-1
2.8
58.9
39.3
Minor BPS
60.6
0.42
1.7
78.3
39.3

Associated Gene:

Gene:
TMOD3
Ensembl Gene ID:
ENSAPLG00000009038
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009480
1965164 - 1983994
18831