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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1980525_1980879_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1980525 - 1980879
Intron Length:
355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTAATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTTAA
U12 Branch Point Sequence:
TTTCTTTTAATA
Flanking Amino Acid:
TLTEIKIDNQRQQLGTLAEV
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.4
32.7
Major BPS
62.1
0.3
1
53.3
33.6
Major PPT
83
0.74
0.8
81.2
29.3
Minor 5ss
32
-2.1
3.1
39.6
46.4
Minor BPS
74.7
0.77
1.1
80
29.3

Associated Gene:

Gene:
TMOD3
Ensembl Gene ID:
ENSAPLG00000009038
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009480
1965164 - 1983994
18831