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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1981025_1983319_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1981025 - 1983319
Intron Length:
2295

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGACCT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTGTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAAAT
U12 Branch Point Sequence:
ACATCTTAAAAT
Flanking Amino Acid:
AAAITKNNDLVRKRRVEGDS
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
69
41.8
Major BPS
70.6
0.51
1.1
75.9
34.4
Major PPT
85.4
0.8
0.9
79.9
37.7
Minor 5ss
34.2
-1.8
3.2
41.7
44.2
Minor BPS
53.4
0.19
1.8
68.14
42.7

Associated Gene:

Gene:
TMOD3
Ensembl Gene ID:
ENSAPLG00000009038
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009480
1965164 - 1983994
18831