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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19828845_19829726_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19828845 - 19829726
Intron Length:
882

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGCTG
5'SS Class:
major
3'SS Sequence:
TCCATTTGTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
TTCTCTCTATTT
Flanking Amino Acid:
PYHYQRVETPVLPPVLVPRH
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.1
57.3
47
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
76.5
0.6
0.9
72
37.8
Minor 5ss
33.4
-1.9
3.6
47.4
48
Minor BPS
53.7
0.2
1.9
75.99
41.5

Associated Gene:

Gene:
SMAD3
Ensembl Gene ID:
ENSAPLG00000007006
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007297
19776851 - 19846310
69460