About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19829862_19830568_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19829862 - 19830568
Intron Length:
707

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGTAT
5'SS Class:
major
3'SS Sequence:
TTTATGATTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CATTTTATGATT
Flanking Amino Acid:
GIEPQSNYIPETPPPGYLSE
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.2
66.7
41.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
75.5
0.57
0.9
67.1
43.6
Minor 5ss
42.9
-0.8
3.5
64.2
47.3
Minor BPS
50.1
0.08
1.6
67.53
37.9

Associated Gene:

Gene:
SMAD3
Ensembl Gene ID:
ENSAPLG00000007006
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007297
19776851 - 19846310
69460