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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19830644_19832393_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19830644 - 19832393
Intron Length:
1750

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
AATGTCTTGATT
Flanking Amino Acid:
DHQMNPSMDAGSPNLSPNPM
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.1
1.09
0.7
87
30
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
84.2
0.77
0.8
81.1
35.5
Minor 5ss
35.9
-1.6
3
49.5
46.7
Minor BPS
62.3
0.47
1.3
73.22
38

Associated Gene:

Gene:
SMAD3
Ensembl Gene ID:
ENSAPLG00000007006
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007297
19776851 - 19846310
69460