About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19832445_19838067_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19832445 - 19838067
Intron Length:
5623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCATG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTGTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTCAC
U12 Branch Point Sequence:
TGTGACTCACTT
Flanking Amino Acid:
NPMSPAHNNLDLQPVTYCEP
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
72.7
44.5
Major BPS
59.5
0.24
1.2
63.3
35.6
Major PPT
84.3
0.77
0.9
80.6
37
Minor 5ss
42.6
-0.8
2.9
49.5
46.5
Minor BPS
45.6
-0.2
2
65.83
44.8

Associated Gene:

Gene:
SMAD3
Ensembl Gene ID:
ENSAPLG00000007006
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007297
19776851 - 19846310
69460