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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1983447_1987776_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1983447 - 1987776
Intron Length:
4330

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTAGAAGG
5'SS Class:
major
3'SS Sequence:
GTCTGTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTTATTTAGTG
Flanking Amino Acid:
ALAILDYIYLDSDSGSESDS
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1.1
67.6
43.5
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
82.1
0.72
0.9
76.2
37.8
Minor 5ss
29.2
-2.4
2.6
32.6
41.7
Minor BPS
57.9
0.11
1.8
68.08
40

Associated Gene:

Gene:
LEO1
Ensembl Gene ID:
ENSAPLG00000009700
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010110
1983374 - 1997900
14527