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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19838281_19839577_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19838281 - 19839577
Intron Length:
1297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAATTTCT
5'SS Class:
major
3'SS Sequence:
GTCTGTTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TCTAAACTAACC
Flanking Amino Acid:
AAVELTRRHIGRGVRLYYIG
Intron Amino Acid Position:
292

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
76
33.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
74.5
0.55
0.9
72.7
37.5
Minor 5ss
43
-0.8
2.8
56.8
42.6
Minor BPS
46.3
-0.3
2.1
62.53
42

Associated Gene:

Gene:
SMAD3
Ensembl Gene ID:
ENSAPLG00000007006
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007297
19776851 - 19846310
69460