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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19853383_19854961_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
19853383 - 19854961
Intron Length:
1579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCC|GTAAGCGAC
5'SS Class:
major
3'SS Sequence:
GTTCCTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
ATGTTTTTAAGA
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63
0.31
1.4
58
41.8
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
85.6
0.8
0.8
79.7
32.4
Minor 5ss
38.5
-1.3
3.4
54.3
43.5
Minor BPS
61.7
0.36
1.6
68.54
38.5

Associated Gene:

Gene:
AAGAB
Ensembl Gene ID:
ENSAPLG00000007346
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007653
19853217 - 19871425
18209