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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19855054_19855168_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19855054 - 19855168
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTGTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
TTTTTCCCATTT
Flanking Amino Acid:
HEQRKLHAEKVAKAFWMAIG
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.6
33.8
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
82.8
0.74
0.9
85.1
29.7
Minor 5ss
32.5
-2
3.3
47.4
48
Minor BPS
48.6
-0
2.1
76.5
40.5

Associated Gene:

Gene:
AAGAB
Ensembl Gene ID:
ENSAPLG00000007346
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007653
19853217 - 19871425
18209