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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19855219_19855729_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19855219 - 19855729
Intron Length:
511

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTCAT
U12 Branch Point Sequence:
TTCTTTTCCACA
Flanking Amino Acid:
RLFSKLKEMKEKAATLPHEQ
Intron Amino Acid Position:
273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
84.6
33
Major BPS
68.2
0.45
1.1
69.4
37.7
Major PPT
87.3
0.84
0.6
83.5
24.9
Minor 5ss
37.3
-1.4
3
52.4
44.2
Minor BPS
49.3
-0
1.9
66.33
40.9

Associated Gene:

Gene:
AAGAB
Ensembl Gene ID:
ENSAPLG00000007346
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007653
19853217 - 19871425
18209