About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19855835_19856498_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19855835 - 19856498
Intron Length:
664

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCTCT
5'SS Class:
strong_major
3'SS Sequence:
GCATTTATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TTACCTAGAACA
Flanking Amino Acid:
TNNLQIDNHVDAMLDTDIQE
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
81.4
33.4
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
73
0.52
0.9
70.5
39.7
Minor 5ss
46.5
-0.4
2.8
65.7
45.4
Minor BPS
52.1
0.06
1.7
68.12
37.4

Associated Gene:

Gene:
AAGAB
Ensembl Gene ID:
ENSAPLG00000007346
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007653
19853217 - 19871425
18209