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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19857201_19861608_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19857201 - 19861608
Intron Length:
4408

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTAAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
TTCTGTCAAACT
Flanking Amino Acid:
NVWSNVVMKTDRTQGFGLLS
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
0.9
81.4
31.6
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
85.4
0.8
0.9
76.9
42.1
Minor 5ss
43.6
-0.7
2.6
56.3
42.5
Minor BPS
46.3
-0.2
2.3
71.75
45.6

Associated Gene:

Gene:
AAGAB
Ensembl Gene ID:
ENSAPLG00000007346
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007653
19853217 - 19871425
18209