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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19864038_19864754_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19864038 - 19864754
Intron Length:
717

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGATAT
5'SS Class:
major
3'SS Sequence:
TTTCCCATGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
GTATGTTTAGAA
Flanking Amino Acid:
ILVCNRVSENGVNRQKAQEW
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
72.1
33.3
Major BPS
70
0.5
1
67
39.8
Major PPT
70.8
0.47
0.9
70.9
34.5
Minor 5ss
45.8
-0.4
2.9
61.2
44.7
Minor BPS
46.3
-0.2
2
58.24
41.1

Associated Gene:

Gene:
AAGAB
Ensembl Gene ID:
ENSAPLG00000007346
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007653
19853217 - 19871425
18209