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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19873540_19878172_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19873540 - 19878172
Intron Length:
4633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTGAAAT
5'SS Class:
major
3'SS Sequence:
CATTATGTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAA
U12 Branch Point Sequence:
ATTATTTTAAGA
Flanking Amino Acid:
SALRISQGSQHQLEMDMKIM
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.3
73.4
37.3
Major BPS
78.5
0.71
0.9
69.7
37.1
Major PPT
76.9
0.61
1
73.1
41.5
Minor 5ss
36.6
-1.5
2.9
49
46.8
Minor BPS
59.8
0.3
1.6
69.65
36.8

Associated Gene:

Gene:
IQCH
Ensembl Gene ID:
ENSAPLG00000007592
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007882
19872989 - 19936660
63672