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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19888779_19889399_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19888779 - 19889399
Intron Length:
621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
CATATTCTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
TGTTCATTAATG
Flanking Amino Acid:
LPLLDEDIKKGILSLTEQRL
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
77.5
32.9
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
71
0.47
0.9
65.2
35.9
Minor 5ss
29.1
-2.4
2.8
34.7
41.7
Minor BPS
69.9
0.48
1.6
73.64
38.6

Associated Gene:

Gene:
IQCH
Ensembl Gene ID:
ENSAPLG00000007592
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007882
19872989 - 19936660
63672