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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19892466_19893096_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19892466 - 19893096
Intron Length:
631

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGCAGT
5'SS Class:
major
3'SS Sequence:
TCTTGATTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
CTCTTCTTGATT
Flanking Amino Acid:
HLENFYIRAKHLAANWNRIR
Intron Amino Acid Position:
388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
70.5
41.4
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
80
0.68
0.8
77.7
35.6
Minor 5ss
41.7
-0.9
2.8
57.4
46.9
Minor BPS
69.4
0.69
1.2
77.76
39.6

Associated Gene:

Gene:
IQCH
Ensembl Gene ID:
ENSAPLG00000007592
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007882
19872989 - 19936660
63672