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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19893164_19897277_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19893164 - 19897277
Intron Length:
4114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATAACAC
5'SS Class:
major
3'SS Sequence:
ACTTGTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TCATCTTTACTT
Flanking Amino Acid:
RRTIIHIPSLGYSQCIREHI
Intron Amino Acid Position:
410

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1
61.1
37.8
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
82
0.72
0.9
73.1
41.5
Minor 5ss
37.7
-1.4
3.1
50.3
46.3
Minor BPS
63.8
0.51
1.6
75.99
41.5

Associated Gene:

Gene:
IQCH
Ensembl Gene ID:
ENSAPLG00000007592
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007882
19872989 - 19936660
63672