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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19897362_19899691_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19897362 - 19899691
Intron Length:
2330

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTTAC
5'SS Class:
major
3'SS Sequence:
CCCTTTGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAATAAT
U12 Branch Point Sequence:
TTTCTCCCAATA
Flanking Amino Acid:
LQMGRLCDILDANVDVIYIC
Intron Amino Acid Position:
438

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
71
35.7
Major BPS
67.7
0.44
1.1
67.9
34.4
Major PPT
77.4
0.62
0.8
75.9
32.7
Minor 5ss
46.1
-0.4
2.5
52.3
45
Minor BPS
50.9
0.02
1.8
69.7
36.4

Associated Gene:

Gene:
IQCH
Ensembl Gene ID:
ENSAPLG00000007592
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007882
19872989 - 19936660
63672