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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19899868_19903102_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19899868 - 19903102
Intron Length:
3235

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTTTG
5'SS Class:
major
3'SS Sequence:
TATCTTTATACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTATCTTTATAC
Flanking Amino Acid:
LTPEAINSFPKHHMCLATQL
Intron Amino Acid Position:
497

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.1
68.2
39.3
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
81.7
0.71
0.9
76.8
36.1
Minor 5ss
41.3
-1
3
59.1
45.3
Minor BPS
61.9
0.35
1.7
72.49
38.4

Associated Gene:

Gene:
IQCH
Ensembl Gene ID:
ENSAPLG00000007592
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007882
19872989 - 19936660
63672