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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1990314_1991735_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1990314 - 1991735
Intron Length:
1422

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTCTG
5'SS Class:
strong_major
3'SS Sequence:
TAATTTATTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TATTGTATAATT
Flanking Amino Acid:
KLPNFLSVEPRPFDPQYYED
Intron Amino Acid Position:
382

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
74.6
41.7
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
79.9
0.67
0.9
73.8
40
Minor 5ss
37.9
-1.4
3
50.1
46.1
Minor BPS
55
0.23
2
77.78
39

Associated Gene:

Gene:
LEO1
Ensembl Gene ID:
ENSAPLG00000009700
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025051
1986997 - 1997900
10904
ENSAPLT00000010110
1983374 - 1997900
14527