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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19905450_19916330_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19905450 - 19916330
Intron Length:
10881

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTCTATTTAATT
Flanking Amino Acid:
AEIWSKKWAHEPALVKISQE
Intron Amino Acid Position:
652

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
89.1
24.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
89.5
0.89
0.7
85
29.8
Minor 5ss
39.8
-1.1
2.9
56
41.5
Minor BPS
71.9
0.76
1.4
84.41
36.8

Associated Gene:

Gene:
IQCH
Ensembl Gene ID:
ENSAPLG00000007592
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007882
19872989 - 19936660
63672