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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19918126_19927383_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19918126 - 19927383
Intron Length:
9258

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTTCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TGTTTCTTAATG
Flanking Amino Acid:
FIHPQTMEQQVWATDLDLCY
Intron Amino Acid Position:
788

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
71.6
0.49
0.9
71.3
39.5
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
77.4
0.72
1.2
75.64
36.3

Associated Gene:

Gene:
IQCH
Ensembl Gene ID:
ENSAPLG00000007592
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007882
19872989 - 19936660
63672