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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1991821_1992170_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1991821 - 1992170
Intron Length:
350

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAATAT
5'SS Class:
major
3'SS Sequence:
TATGTTCTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TATGAATTAAAA
Flanking Amino Acid:
EEGRTRLKLKVENTIRWRMR
Intron Amino Acid Position:
411

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
72.8
32.3
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
73.5
0.53
1
69.1
41.6
Minor 5ss
45
-0.5
3
64.3
47.2
Minor BPS
48.8
-0
2
64.54
40.9

Associated Gene:

Gene:
LEO1
Ensembl Gene ID:
ENSAPLG00000009700
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010110
1983374 - 1997900
14527
ENSAPLT00000025051
1986997 - 1997900
10904