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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19930640_19931899_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19930640 - 19931899
Intron Length:
1260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAAGCA
5'SS Class:
major
3'SS Sequence:
TTCTACTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAA
U12 Branch Point Sequence:
TTCTACTTAACA
Flanking Amino Acid:
KAHGVGFDLQEKQGTIFILY
Intron Amino Acid Position:
886

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1
63.8
34.2
Major BPS
67.7
0.44
1
58.3
38.4
Major PPT
77.7
0.62
0.9
73.4
35.6
Minor 5ss
36.2
-1.6
3.4
48.1
47.6
Minor BPS
78.6
0.89
1.4
84.46
35.5

Associated Gene:

Gene:
IQCH
Ensembl Gene ID:
ENSAPLG00000007592
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007882
19872989 - 19936660
63672