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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19935197_19936558_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19935197 - 19936558
Intron Length:
1362

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
GAATCCGTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
TATTCCTTGAAT
Flanking Amino Acid:
PNMQGETNFKMAIQDIEAIL
Intron Amino Acid Position:
943

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
36.7
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
66.4
0.37
1
57.6
42.7
Minor 5ss
33
-1.9
3.3
46.8
48.5
Minor BPS
78.6
0.98
1.3
89.71
33.9

Associated Gene:

Gene:
IQCH
Ensembl Gene ID:
ENSAPLG00000007592
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007882
19872989 - 19936660
63672