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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19958216_19962347_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19958216 - 19962347
Intron Length:
4132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTACG
5'SS Class:
major
3'SS Sequence:
ATTTCTTTGATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
ATTTCTTTGATA
Flanking Amino Acid:
LPDATTTAFEYEDEDGDRIT
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1.1
68.3
42.6
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
75.7
0.58
0.9
73.2
36.7
Minor 5ss
38
-1.3
2.7
44.8
42.5
Minor BPS
76.3
0.82
1
80.1
28.7

Associated Gene:

Gene:
MAP2K5
Ensembl Gene ID:
ENSAPLG00000007755
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020223
19952237 - 20077955
125719
ENSAPLT00000008106
19952237 - 20077955
125719