About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19971549_19973988_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19971549 - 19973988
Intron Length:
2440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TTAAAAATAATT
Flanking Amino Acid:
SAVSDSLPSNSLKKSSAELK
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
82.4
28.6
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
92.2
0.95
0.7
88.5
28.4
Minor 5ss
35
-1.7
3.5
49.9
46.6
Minor BPS
46.4
-0.1
2
69.5
40.6

Associated Gene:

Gene:
MAP2K5
Ensembl Gene ID:
ENSAPLG00000007755
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020223
19952237 - 20077955
125719
ENSAPLT00000008106
19952237 - 20077955
125719