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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19998547_19998641_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19998547 - 19998641
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTTTTTTAAACA
Flanking Amino Acid:
IMSELEILYKCDSSYIIGFY
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
83.5
35.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
94.6
1
0.6
88.2
29.1
Minor 5ss
55
0.17
2.5
74.6
41.7
Minor BPS
64
0.44
1.7
73.92
38.7

Associated Gene:

Gene:
MAP2K5
Ensembl Gene ID:
ENSAPLG00000007755
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020223
19952237 - 20077955
125719
ENSAPLT00000008106
19952237 - 20077955
125719