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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19998724_20002652_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19998724 - 20002652
Intron Length:
3929

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTATGTTACCT
Flanking Amino Acid:
RISLCTEFMDGGSLDVYRKI
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
85.7
25.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
84
0.77
0.8
78.1
30.7
Minor 5ss
40.8
-1
3
55
43.6
Minor BPS
51.5
0.13
2.3
79.88
42.3

Associated Gene:

Gene:
MAP2K5
Ensembl Gene ID:
ENSAPLG00000007755
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020223
19952237 - 20077955
125719
ENSAPLT00000008106
19952237 - 20077955
125719