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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20019159_20030836_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20019159 - 20030836
Intron Length:
11678

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
ATCTATATAACT
Flanking Amino Acid:
VWSLGISFMELALGRFPYPQ
Intron Amino Acid Position:
349

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
75.9
35.2
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
87
0.83
0.7
80.3
31.6
Minor 5ss
44.8
-0.6
2.6
56.7
47.6
Minor BPS
56.7
0.29
1.8
76.27
40.2

Associated Gene:

Gene:
MAP2K5
Ensembl Gene ID:
ENSAPLG00000007755
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020223
19952237 - 20077955
125719
ENSAPLT00000008106
19952237 - 20077955
125719