About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_20030867_20043202_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20030867 - 20043202
Intron Length:
12336

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATTG
5'SS Class:
strong_major
3'SS Sequence:
TGCCTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTGATTATGACA
Flanking Amino Acid:
LALGRFPYPQIQKNQGSLMP
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.99
0.8
81.6
33.2
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
85.7
0.8
0.8
83.8
31.2
Minor 5ss
41.6
-0.9
3.1
55.7
48.5
Minor BPS
49.3
-0
1.6
63.11
37.2

Associated Gene:

Gene:
MAP2K5
Ensembl Gene ID:
ENSAPLG00000007755
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008106
19952237 - 20077955
125719